SNP Profiles matching POUND 5 /C

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 1234567891011121314
_Input profile
CCAAGGTTTTCCTTTTCCAAGGCCGGTT
1._POUND_5_/C
CCAAGGTTTT_TTTTCCAAGGCCGGTT
2._POUND_5_/C
CCAAGGTTTT_TTTTCCAAGGCCGGTT
3._POUND_5_/C
CCAAGGTTTT_TTTTCCAAGGCCGGTT
4._POUND_5_/C
CCAAGGTTTT_TTTTCCAAGGCCGGTT
5._GC-08-165-4-08
CCAAGGTTTT_TTTTCCAAGGCCGGTT
6._GC-08-165-4-08
CCAAGGTTTT_TTTTCCAAGGCCGGTT
7._GC-08-165-4-08
CCAAGGTTTT_TTTTCCAAGGCCGGTT
8._GC-08-165-4-08
CCAAGGTTTT_TTTTCCAAGGCCGGTT
9._RUQ_468
_AAGGTT___TT___CCGG_
10._RUQ_897
_AACGTT___TT___CCGG_
11._RUQ_801
_AAGGTT___TT___CCGG_
12._RUQ_1587
_AAGGTT___TT___CCGG_
13._RUQ_515
_AACGTT___TT___CCAG_
14._NA_286
CCAAGGTTTTACTTTTCCAAAACCGGTT
15._NA_286
CCAAGGTTTTAATTTTCCAAAACCGGTT
16._GC-01-101-5-18
CCAAGGTTTTAATTTTCCAAAACCGGTT
17._NA_286
CCAAGGTTTTAATT_CCAAAACCGGTT
18._GC-01-101-5-18
CCAAGGTTTTAATT_CCAAAACCGGTT
19._RUQ_1588
_AACGTT___TT___CCAG_
20._RUQ_1334
_AACCTT___TT___CCGG_
21._RUQ_877
_AACCTT___TT___CCGG_
22._POUND_2_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
23._POUND_2_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
24._POUND_2_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
25._POUND_2_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
26._POUND_2_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
27._POUND_2_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
28._GC-01-093-5-10
CCAACCTTTTAATTTTCCAAAGCCGGTT
29._GC-01-093-5-10
CCAACCTTTTAATTTTCCAAAGCCGGTT
30._GC-01-093-5-10
CCAACCTTTTAATTTTCCAAAGCCGGTT
31._GC-01-093-5-10
CCAACCTTTTAATTTTCCAAAGCCGGTT
32._GC-01-093-5-10
CCAACCTTTTAATTTTCCAAAGCCGGTT
33._GC-01-093-5-10
CCAACCTTTTAATTTTCCAAAGCCGGTT
34._POUND_2_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
35._POUND_25_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
36._MARPER_38
CCAACGTT-AATT-CCAAAG-GGTT
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGAACCAAGGGGCTCCAA
1._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
2._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
3._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
4._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
5._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
6._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
7._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
8._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
9._RUQ_468
___CCGGGG_CCAAGGGGCTCCAA
10._RUQ_897
___CCGGGG_CCAAGGGGCTCCAA
11._RUQ_801
___CCGGGG_CCAAGGGGCCCCAA
12._RUQ_1587
___CCGGGG_CCAAGGGGCCCCAA
13._RUQ_515
___CCGGGG_CCAAGGGGTTCCAA
14._NA_286
AAGGCCCCGGGGAACCAAGGGGCCCCAA
15._NA_286
AAGGCCCCGGGGAACCAAGGGGCCCCAA
16._GC-01-101-5-18
AAGGCCCCGGGGAACCAAGGGGCCCCAA
17._NA_286
AAGGCCCCGGGGAACCAAGGGGCCCCAA
18._GC-01-101-5-18
AAGGCCCCGGGGAACCAAGGGGCCCCAA
19._RUQ_1588
___CCGGGG_CCAAGGGGTTCCAA
20._RUQ_1334
___CCCGGG_CCAAGGGGTTCCAA
21._RUQ_877
___CCCGGG_CCAAGGGG-CCAA
22._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
23._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
24._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
25._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
26._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
27._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
28._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
29._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
30._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
31._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
32._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
33._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
34._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
35._POUND_25_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
36._MARPER_38
AAGG-CC-GGAACC-GG-CTCCAA
 29303132333435363738    
_Input profile
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
1._POUND_5_/C
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
2._POUND_5_/C
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
3._POUND_5_/C
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
4._POUND_5_/C
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
5._GC-08-165-4-08
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
6._GC-08-165-4-08
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
7._GC-08-165-4-08
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
8._GC-08-165-4-08
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
9._RUQ_468
_AACCAAAACCGGCC__X_XX_XX_XX_X
10._RUQ_897
_AACCAAAACCGGCC__X_XX_XX_XX_X
11._RUQ_801
_AACCAAAACCGGCC__X_XX_XX_XX_X
12._RUQ_1587
_AACCAAAACCGGCC__X_XX_XX_XX_X
13._RUQ_515
_AACCAGAACCGGCC__X_XX_XX_XX_X
14._NA_286
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
15._NA_286
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
16._GC-01-101-5-18
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
17._NA_286
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
18._GC-01-101-5-18
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
19._RUQ_1588
_AACCAAAACCGGCC__X_XX_XX_XX_X
20._RUQ_1334
_AACCAGAACCGGCC__X_XX_XX_XX_X
21._RUQ_877
_AACCAAAACCGGCC__X_XX_XX_XX_X
22._POUND_2_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
23._POUND_2_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
24._POUND_2_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
25._POUND_2_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
26._POUND_2_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
27._POUND_2_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
28._GC-01-093-5-10
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
29._GC-01-093-5-10
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
30._GC-01-093-5-10
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
31._GC-01-093-5-10
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
32._GC-01-093-5-10
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
33._GC-01-093-5-10
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
34._POUND_2_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
35._POUND_25_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
36._MARPER_38
GG-CCAA--GG-TT-X_XX_XX_XX_X

Input profile: POUND_5_/C

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

1._POUND_5_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

2._POUND_5_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

3._POUND_5_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

4._POUND_5_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

5._POUND_5_/C GC-08-165-4-08

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._POUND_5_/C GC-08-165-4-08

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._POUND_5_/C GC-08-165-4-08

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._POUND_5_/C GC-08-165-4-08

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

9._NA_756 RUQ_468

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._CRU_70 RUQ_897

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._NA_149 RUQ_801

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._NA_702 RUQ_1587

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._IMC_27 RUQ_515

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._NA_286

93.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

15._NA_286

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

16._NA_286 GC-01-101-5-18

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

17._NA_286

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

18._NA_286 GC-01-101-5-18

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

19._NA_710 RUQ_1588

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._NA_916 RUQ_1334

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._CRU_100 RUQ_877

90.9 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._POUND_2_/A

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

23._POUND_2_/A

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

24._POUND_2_/A

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

25._POUND_2_/A

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

26._POUND_2_/A

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

27._POUND_2_/A

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

28._POUND_2_/A GC-01-093-5-10

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

29._POUND_2_/A GC-01-093-5-10

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

30._POUND_2_/A GC-01-093-5-10

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

31._POUND_2_/A GC-01-093-5-10

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

32._POUND_2_/A GC-01-093-5-10

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

33._POUND_2_/A GC-01-093-5-10

90.8 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

34._POUND_2_/A

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

35._POUND_25_/A

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

36._MARPER_38

90.4 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 167
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25